MatLab scripts to segment and analyse polymerase clusters in 3D microscopy image stacks:

Scripts for the interactive choice and fine-tuning of image segmentation algorithms, as shown in Hajiabadi et al. Journal of Systems and Software, 2024:

3D-printing model for a stamp to create imaging wells in agarose for the microscopy of zebrafish embryos

Molecular Dynamics Simulations of Enhancer-Promoter Interactions in a Model Shoe Box, repository with ongoing code development:

Video of a developing one-cell-stage to 21-somite-stage development of a zebrafish embryo:

Lecture Notes “Basics of Image Processing, using Cell Profiler”, view-only link for Overleaf: